User:Jaime Prilusky/Sandbox Nucleosome

 proteome and proteomics by retrieve by ftp or FTP as protocol button04 button05

radio04

radio08 radio09 radio10 radio11

 fold motifs

jmolButton("background [xffffff]; load /cgi-bin/getpdbz?1aoi; set frank off; set echo bottom center; echo PDB ID: 1AOI; color echo black; select all; spin off; wireframe off; spacefill off; trace off; set ambient 40; set specpower 40; slab off; ribbons off; cartoons off; label off; monitor off; rotate x 5; rotate y 180; rotate z -2; zoom 110; translate y -4; select dna; color cpk; spacefill; select DNA and backbone; color violet; select protein; spacefill; color tan; select t1; wireframe off; select a1; wireframe off; move 0 360 0 0 0 0 0 0 6", "load PDB 1AOI" );

jmolButton("background [xffffff]; load /cgi-bin/getpdbz?1aoi; set frank off; set echo bottom center; echo PDB ID: 1AOI; color echo black; select all; spin off; wireframe off; spacefill off; trace off; set ambient 40; set specpower 40; slab off; ribbons off; cartoons off; label off; monitor off; rotate x 5; rotate y 180; rotate z -2; zoom 110; translate y -4; select dna; color cpk; spacefill; select DNA and backbone; color violet; select protein; spacefill; color tan; select t1; wireframe off; select a1; wireframe off; move 0 360 0 0 0 0 0 0 6", "reset" );

This shows the xx importance of something.

jmolRadio( "background [xffffff]; load /cgi-bin/getpdbz?1aoi; set frank off; select all; spin off; wireframe off; spacefill off; trace off; set ambient 40; set specpower 40; slab off; ribbons off; cartoons off; label off; monitor off; rotate x 5; rotate z -2; move -270 0 0 0 0 0 0 0 .1; zoom 110; translate y -4; select dna; spacefill; color cpk; select DNA and backbone; color violet; select t1; wireframe off; select a1; wireframe off; select :a, :e; color [x63529C]; select :b, :f; color green; select :c, :g; color [xFFF200]; select :d, :h; color[xFC351F]; select protein; cartoons; select 1-72:i, 220-292:j; color [x666666]; select 74-146:i, 147-218:j; color deepskyblue; select 73:i, 219:j; color red; delay 1; select 73:i, 219:j; color red; select dna; spacefill; wireframe 30; delay .1; spacefill 400; delay .1; spacefill 375; delay .1; spacefill 350; delay .1; spacefill 325; delay .1; spacefill 300; delay .1; spacefill 275; delay .1; spacefill 250; delay .1; spacefill 200; delay .1; spacefill 175; delay .1; spacefill 150; delay .1; spacefill 125; delay .1; spacefill 100; delay .1; spacefill 75; delay .1; spacefill 50; delay .1; spacefill 30; wireframe 30; delay .1; spacefill off; wireframe off; delay 1; move 0 36 0 0 0 0 0 0 2; select 1:i, 292:j; spacefill; delay .05; select 2:i, 291:j; spacefill; delay .05; select 3:i, 290:j; spacefill; delay .05; select 4:i, 289:j; spacefill; delay .05; select 5:i, 288:j; spacefill; delay .05; select 6:i, 287:j; spacefill; delay .05; select 7:i, 286:j; spacefill; delay .05; select 8:i, 285:j; spacefill; delay .05; select 9:i, 284:j; spacefill; delay .05; select 10:i, 283:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 11:i, 282:j; spacefill; delay .05; select 12:i, 281:j; spacefill; delay .05; select 13:i, 280:j; spacefill; delay .05; select 14:i, 279:j; spacefill; delay .05; select 15:i, 278:j; spacefill; delay .05; select 16:i, 277:j; spacefill; delay .05; select 17:i, 276:j; spacefill; delay .05; select 18:i, 275:j; spacefill; delay .05; select 19:i, 274:j; spacefill; delay .05; select 20:i, 273:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 21:i, 272:j; spacefill; delay .05; select 22:i, 271:j; spacefill; delay .05; select 23:i, 270:j; spacefill; delay .05; select 24:i, 269:j; spacefill; delay .05; select 25:i, 268:j; spacefill; delay .05; select 26:i, 267:j; spacefill; delay .05; select 27:i, 266:j; spacefill; delay .05; select 28:i, 265:j; spacefill; delay .05; select 29:i, 264:j; spacefill; delay .05; select 30:i, 263:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 31:i, 262:j; spacefill; delay .05; select 32:i, 261:j; spacefill; delay .05; select 33:i, 260:j; spacefill; delay .05; select 34:i, 259:j; spacefill; delay .05; select 35:i, 258:j; spacefill; delay .05; select 36:i, 257:j; spacefill; delay .05; select 37:i, 256:j; spacefill; delay .05; select 38:i, 255:j; spacefill; delay .05; select 39:i, 254:j; spacefill; delay .05; select 40:i, 253:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 41:i, 252:j; spacefill; delay .05; select 42:i, 251:j; spacefill; delay .05; select 43:i, 250:j; spacefill; delay .05; select 44:i, 249:j; spacefill; delay .05; select 45:i, 248:j; spacefill; delay .05; select 46:i, 247:j; spacefill; delay .05; select 47:i, 246:j; spacefill; delay .05; select 48:i, 245:j; spacefill; delay .05; select 49:i, 244:j; spacefill; delay .05; select 50:i, 243:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 51:i, 242:j; spacefill; delay .05; select 52:i, 241:j; spacefill; delay .05; select 53:i, 240:j; spacefill; delay .05; select 54:i, 239:j; spacefill; delay .05; select 55:i, 238:j; spacefill; delay .05; select 56:i, 237:j; spacefill; delay .05; select 57:i, 236:j; spacefill; delay .05; select 58:i, 235:j; spacefill; delay .05; select 59:i, 234:j; spacefill; delay .05; select 60:i, 233:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 61:i, 232:j; spacefill; delay .05; select 62:i, 231:j; spacefill; delay .05; select 63:i, 230:j; spacefill; delay .05; select 64:i, 229:j; spacefill; delay .05; select 65:i, 228:j; spacefill; delay .05; select 66:i, 227:j; spacefill; delay .05; select 67:i, 226:j; spacefill; delay .05; select 68:i, 225:j; spacefill; delay .05; select 69:i, 224:j; spacefill; delay .05; select 70:i, 223:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 71:i, 222:j; spacefill; delay .05; select 72:i, 221:j; spacefill; delay .05; select 73:i, 220:j; spacefill; delay .05; select 74:i, 219:j; spacefill; delay .05; select 75:i, 218:j; spacefill; delay .05; select 76:i, 217:j; spacefill; delay .05; select 77:i, 216:j; spacefill; delay .05; select 78:i, 215:j; spacefill; delay .05; select 79:i, 214:j; spacefill; delay .05; select 80:i, 213:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 81:i, 212:j; spacefill; delay .05; select 82:i, 211:j; spacefill; delay .05; select 83:i, 210:j; spacefill; delay .05; select 84:i, 209:j; spacefill; delay .05; select 85:i, 208:j; spacefill; delay .05; select 86:i, 207:j; spacefill; delay .05; select 87:i, 206:j; spacefill; delay .05; select 88:i, 205:j; spacefill; delay .05; select 89:i, 204:j; spacefill; delay .05; select 90:i, 203:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 91:i, 202:j; spacefill; delay .05; select 92:i, 201:j; spacefill; delay .05; select 93:i, 200:j; spacefill; delay .05; select 94:i, 199:j; spacefill; delay .05; select 95:i, 198:j; spacefill; delay .05; select 96:i, 197:j; spacefill; delay .05; select 97:i, 196:j; spacefill; delay .05; select 98:i, 195:j; spacefill; delay .05; select 99:i, 194:j; spacefill; delay .05; select 100:i, 193:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 101:i, 192:j; spacefill; delay .05; select 102:i, 191:j; spacefill; delay .05; select 103:i, 190:j; spacefill; delay .05; select 104:i, 189:j; spacefill; delay .05; select 105:i, 188:j; spacefill; delay .05; select 106:i, 187:j; spacefill; delay .05; select 107:i, 186:j; spacefill; delay .05; select 108:i, 185:j; spacefill; delay .05; select 109:i, 184:j; spacefill; delay .05; select 110:i, 183:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 111:i, 182:j; spacefill; delay .05; select 112:i, 181:j; spacefill; delay .05; select 113:i, 180:j; spacefill; delay .05; select 114:i, 179:j; spacefill; delay .05; select 115:i, 178:j; spacefill; delay .05; select 116:i, 177:j; spacefill; delay .05; select 117:i, 176:j; spacefill; delay .05; select 118:i, 175:j; spacefill; delay .05; select 119:i, 174:j; spacefill; delay .05; select 120:i, 173:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 121:i, 172:j; spacefill; delay .05; select 122:i, 171:j; spacefill; delay .05; select 123:i, 170:j; spacefill; delay .05; select 124:i, 169:j; spacefill; delay .05; select 125:i, 168:j; spacefill; delay .05; select 126:i, 167:j; spacefill; delay .05; select 127:i, 166:j; spacefill; delay .05; select 128:i, 165:j; spacefill; delay .05; select 129:i, 164:j; spacefill; delay .05; select 130:i, 163:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 131:i, 162:j; spacefill; delay .05; select 132:i, 161:j; spacefill; delay .05; select 133:i, 160:j; spacefill; delay .05; select 134:i, 159:j; spacefill; delay .05; select 135:i, 158:j; spacefill; delay .05; select 136:i, 157:j; spacefill; delay .05; select 137:i, 156:j; spacefill; delay .05; select 138:i, 155:j; spacefill; delay .05; select 139:i, 154:j; spacefill; delay .05; select 140:i, 153:j; spacefill; delay .05; move 0 43.7 0 0 0 0 0 0 .8; select 141:i, 152:j; spacefill; delay .05; select 142:i, 151:j; spacefill; delay .05; select 143:i, 150:j; spacefill; delay .05; select 144:i, 149:j; spacefill; delay .05; select 145:i, 148:j; spacefill; delay .05; select 146:i, 147:j; spacefill; move 0 72.2 0 0 0 0 0 0 3; move -90 0 0 0 0 0 0 0 3; move 0 180 0 0 0 0 0 0 4; delay 1; select dna; color cpk; select dna and backbone; color violet; wireframe off; trace off; cartoons off; select dna; spacefill; delay 1; select protein; color tan; cartoons; delay .1; spacefill 30; delay .1; spacefill 50; delay .1; spacefill 75; delay .1; spacefill 100; delay .1; spacefill 125; delay .1; spacefill 150; delay .1; spacefill 175; delay .1; spacefill 200; delay .1; spacefill 225; delay .1; spacefill 250; delay .1; spacefill 275; delay .1; spacefill 300; delay .1; spacefill 325; delay .1; spacefill 350; delay .1; spacefill 375; delay .1; spacefill 400; delay .1; spacefill;", "", false );